Pharos - pharos

Grade: The grade for the resource as automatically determined by the criteria violations.; 1
Description: A full description of the resource from the resource itself, if possible.; Pharos is the user interface to the Knowledge Management Center (KMC) for the Illuminating the Druggable Genome (IDG) program...
Last curated: (Optional) The ISO 8601 date of when the resource was last curated.; 2017-12-03
Location: URL for the resource.; https://pharos.nih.gov/
Source type: (Optional) How the resource relates to the data it contains. Current allowable entries are: "unknown", "repository", "source", "integrator", and "warehouse".; integrator
Curation status: Whether or not annotation is complete on this resource. Current allowable entries are: "complete", "incomplete", and "nonpublic".; complete
Field: The area of research for the resource.; biology
Type: The type of data the resource contains.
Categories: (Optional) Tags to describe the resource and its data.; disease
targets
ligands
Access: (Optional) Links to the resource's data.; api
download
License: The license that is used by the resource. We use SPDX where we can or: "inconsistent", "public domain", "unlicensed", "all rights reserved", or "custom".; inconsistent
License type: The type of license that is being used. This will be to define compatible data pools in the future; we only use the grossest terms now. If it is not known "unknown" is used. Current possible values are: "unknown", "unlicensed", "copyleft", "permissive", "public domain", "copyright", "restrictive", or "private pool".; unknown
License location: (Optional) The link to the resource license.; http://juniper.health.unm.edu/tcrd/download/README
Focused curation: (Optional) Setting this flag to true indicates that the licensing was combinatorially complicated enough (as is the case in some commercial licenses) that the curator chose to wear a single "hat" during the process. From the site text: "While we try to cover as much of the licensing possibilities of a data resource that we can, in a few cases we may choose a particular "hat" to wear while evaluating to prevent a combinatorial explosion, which may also reduce the clarity of our curations for the community. In these cases, we may take on the role of a (1) non-commercial (2) academic (3) group that is (4) based in the US and trying to (5) create an aggregating resource, noting that other entities may have different results in the license commentary."; false
Issues: (Optional) Structured issues with the license. For every issue discovered with a resource, there should be a corresponding item in the license-issues field that marks the /exact/ violation, along with any comments. This field can be used by resources as the first step to improvement, as well as clarify any surrounding circumstances. Any issues or thoughts about a resource that do not slot into one of the criteria violations can go into the license-commentary field.; Criteria A.1.1: While any novel data is under a CC license (CC-BY-SA-4.0), the integrated resources are under whatever license the upstream is, with the user expected to sort it out.
Commentary: (Optional) Further commentary on the license, possibly including the though process of the curations and things like locations of additional licenses.; • Unfortunately, the API ToS link leads to a bad (404-type) Swagger page.
• From the license page: \"Please note that TCRD incoporates many data sources with a variety of associated licenses...Users of the TCRD downloads are resposible for compliance with these licenses.\"
• Given the variety and terms of the upstream resources, the inconsistency is not unexpected.
• The license is also found here at https://pharos.nih.gov/idg/about, which has similar wording to the README on the downloads page, but makes no note of the user responsibility to adhere to licenses from original data sources.
Controversial: (Optional) Marker noting that there was some extended internal discussion or controversy about the evaluation of the licensing terms. If this is marked at "true", the controversy, or a link to a permanent archive of the controversy, must be sufficiently contained in the "license-commentary" to reconstruct the issues.; false
Contacts: (Optional) Resource contact information, link, email, or whatever is public.; pharos@mail.nih.gov
Grants: (Optional) Semi-structured list of supporting grants.; Pharos is the user interface to the Knowledge Management Center (KMC) for the Illuminating the Druggable Genome (IDG) program funded by the National Institutes of Health (NIH) Common Fund. (Grant No. 5U54CA189205-02).